Mastering Linux for Bioinformatics: 1 Day Course in Calgary
About this Event
Group Discounts:
- Save 10% when registering 3 or more participants
- Save 15% when registering 10 or more participants
Duration: 1 Full Day (9:00 AM – 5:00 PM)
Delivery Mode: Classroom (In-Person)
Language: English
Credits: 8 PDUs / Training Hours
Certification: Course Completion Certificate
Refreshments: Lunch, beverages, and light snacks included
If you would like weekend training sessions, kindly reach out to us at for availability and scheduling.
Course Overview
This practical training introduces Linux to learners who work with biological data. You will develop skills in navigating the Linux environment, handling biological files, running command-line bioinformatics tools, writing simple scripts, and working on remote HPC platforms. Real datasets and uncomplicated workflows help reinforce learning and build command-line confidence. Programming experience is not required.
Learning Objectives
- Become familiar with Linux and command-line workflows
- Navigate directories and handle biological files
- Apply fundamental Linux commands
- Run standard bioinformatics tools
- Work with major biological file formats
- Write basic shell scripts for automation
- Access and operate HPC or server environments
- Complete real bioinformatics tasks using Linux
Target Audience
- Bioinformatics and computational biology students
- Molecular biology and biotechnology students
- Researchers analyzing biological sequence data
- Medical and clinical trainees
- Laboratory professionals
- Beginners and professionals entering computational fields
Why Choose This Course?
You will gain a practical foundation in Linux specifically for bioinformatics. Hands-on work with real biological files, tools, and workflows makes the training useful for learners who need to apply command-line skills in actual research or computational environments.
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In-House Training
Tailored in-house programs can be delivered for universities, hospitals, research labs, and biotechnology companies. Content can be customized according to your datasets, workflows, and team experience.
📧 Contact us today to schedule a customized in-house, face-to-face session:
Agenda
Module 1: Linux Basics
Info: • Introduction to Linux and its use in bioinformatics
• Understanding the file system and directory structure
• Basic file handling and navigation
• Icebreaker Activity
Module 2: Working With Biological Files
Info: • Opening and interpreting FASTA and FASTQ files
• Searching biological patterns in datasets
• Editing and organizing sequence files
• Activity
Module 3: CLI Bioinformatics Tools
Info: • Installing common bioinformatics tools
• Running analyses using command-line tools
• Understanding file formats like FASTA, FASTQ, SAM, BAM
• Role Play
Module 4: Shell Scripting
Info: • Writing simple shell scripts for automation
• Using variables, loops, and logic in scripts
• Applying scripts to bioinformatics workflows
• Case Study
Module 5: Working on HPC & Remote Servers
Info: • Connecting to remote servers and cluster environments
• Submitting jobs using schedulers
• Monitoring job outputs and logs
• Simulation
Module 6: Practical Data Processing Concepts
Info: • Organizing bioinformatics project directories
• Running small data analyses with installed tools
• Processing sequence data through simple workflows
• Group Brainstorm Activity
Module 7: Practical Hands-On Challenge
Info: • Executing a full beginner-friendly sequence analysis
• Running scripts on sample datasets
• Interpreting results from multiple command-line tools
• Action Plan Review
Where is it happening?
Event Location & Nearby Stays:
CAD 807.56 to CAD 1014.56
