From Sample Tracking to Genomic Variant Analysis with Stager and Seqr

Hybrid hands-on data science tutorial for staff and students at SickKids and beyond, offered by the Centre for Computational Medicine (CCM)
About this Event

Hands-on tutorial to help build skills required in Precision Child Health, data science and bioinformatics for SickKids staff and trainees.

Topics include:

• Introduction to CCM's Stager and seqr platforms
• Sample tracking and management using Stager
• Genomic variant analysis using seqr
• Overview of seqr features: Project management, gene list creation, variant filtering, IGV within seqr, variant/gene level look-ups
• Setting up and managing your own project on a local seqr instance

Sponsors

This course is supported by:

• Centre for Computational Medicine, SickKids
• Digital Research Alliance of Canada and Compute Ontario